PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14641_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 132aa    MW: 15480.7 Da    PI: 10.1263
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14641_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.7e-172977355
                                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                         + GVr+++ +gr++AeIrdps+   + r++lg+f+ a+eAa a+++a+++++g
  cra_locus_14641_iso_1_len_820_ver_3 29 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDAAQEAALAYDRAALSIKG 77
                                         56******.**********965...5***********************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.0992885IPR001471AP2/ERF domain
SMARTSM003802.0E-312891IPR001471AP2/ERF domain
CDDcd000181.95E-252884No hitNo description
PRINTSPR003671.8E-72940IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-272985IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-202987IPR016177DNA-binding domain
PfamPF008472.9E-103177IPR001471AP2/ERF domain
PRINTSPR003671.8E-75167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
XRNTSVFTQP STEKRGRRKN QTAHEPGRFL GVRRRPWGRY AAEIRDPSTK ERHWLGTFDA  60
AQEAALAYDR AALSIKGNSA RTNFVYSNNY SDHFNFLPNF HHEEKLEGNK VLFHENKANN  120
YENDEKNNGF FW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-173184559ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-172984662ATERF1
3gcc_A5e-172984662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609622.16e-42ethylene response factor
RefseqXP_014508449.16e-42PREDICTED: ethylene-responsive transcription factor ERF086-like
SwissprotQ6J9Q27e-39ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLA0A068TS671e-42A0A068TS67_COFCA; Uncharacterized protein
STRINGGLYMA17G02711.12e-40(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93072125